Stem-loop oan-mir-1421g-1

Accession

MI0006768

Description

Ornithorhynchus anatinus oan-mir-1421g-1 precursor miRNA

Sequence

4786 reads, 2056 reads per million, 4 experiments

ggcuucaggugacauacggcacggugcgAGGGGGUCGUACGUCAUGCAGAaugaugguggaauacgcUGCGUUGCGUGCGACUUCCCUUcaccgagcugggucucuccggcc
((((..(((.(((...((((.(((((.(((((((((((((((.((((((....((......))...)))))).))))))))).))))))))))).)))).))))))..))))

Structure

    uc   u   aua    a     c      -         C      Aaug  gg 
ggcu  agg gac   cggc cggug gAGGGG GUCGUACGU AUGCAG    au  u
||||  ||| |||   |||| ||||| |||||| ||||||||| ||||||    ||   
ccgg  ucu cug   gucg gccac UUCCCU CAGCGUGCG UGCGUc    ua  g
    cc   -   --g    a     -      U         U      -gca  ag 

Annotation confidence Not enough data

Genome context

Contig22847: 6129-6240 [-]

Clustered miRNAs

11 other miRNAs are < 10 kb from oan-mir-1421g-1

Mature oan-miR-1421g-5p

• Accession: MIMAT0006975
• Description: Ornithorhynchus anatinus oan-miR-1421g-5p mature miRNA
• Sequence: 29 - AGGGGGUCGUACGUCAUGCAGA - 50
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1421g-1-3p

• Accession: MIMAT0006976
• Description: Ornithorhynchus anatinus oan-miR-1421g-1-3p mature miRNA
• Sequence: 68 - UGCGUUGCGUGCGACUUCCCUU - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004