Stem-loop oan-mir-142

Accession

MI0006772

Description

Ornithorhynchus anatinus oan-mir-142 precursor miRNA

Literature search

1 open access papers mention oan-mir-142
(2 sentences)

Sequence

16288 reads, 372.0 reads per million, 5 experiments

cgacagacagacagacagugcagucaucCAUAAAGUAGAAAGCACUACUAacagcgcuguaggguGUAGUGUUUCCUACUUUAUGGAUgaguguacugugggcuucggag
(((.....((.(..((((((((.(((((((((((((((.(((((((((.....((.(....).))))))))))).))))))))))))))).))))))))..))))))...

Structure

---   cagac  a ag        g               A         UAaca  g u 
   cga     ag c  acagugca ucaucCAUAAAGUAG AAGCACUAC     gc c g
   |||     || |  |||||||| ||||||||||||||| |||||||||     || |  
   gcu     uc g  ugucaugu agUAGGUAUUUCAUC UUUGUGAUG     ug g u
gag   -----  - gg        g               C         -----  g a 

Annotation confidence High

Genome context

17: 11231613-11231722 [-]

Mature oan-miR-142-5p

• Accession: MIMAT0006982
• Description: Ornithorhynchus anatinus oan-miR-142-5p mature miRNA
• Sequence: 29 - CAUAAAGUAGAAAGCACUACUA - 50
• Evidence: experimental ; Illumina [1]

Mature oan-miR-142-3p

• Accession: MIMAT0006983
• Description: Ornithorhynchus anatinus oan-miR-142-3p mature miRNA
• Sequence: 66 - GUAGUGUUUCCUACUUUAUGGAU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004