Stem-loop oan-let-7e

Accession

MI0006773

Description

Ornithorhynchus anatinus oan-let-7e precursor miRNA

Sequence

3210869 reads, 51664 reads per million, 5 experiments

ggcucccaccacaguccuguccuugaggcUGAGGUAGUAGAUUGAAUAGUUguggggucacggccucccugugugcuaaCUAUACAAUCUACUGUCUUUCCugaggcgacagucaguucgcc
((((........))))((((((((.(((..((((((((((((((.(((((..(((.(.(((((.....)))))).)))))))).)))))))))))))).))).))).)))))..........

Structure

ggcucccaccacaguc     -   g   cU              A     Ug   g u     c 
                cuguc cuu agg  GAGGUAGUAGAUUG AUAGU  ugg g cacgg c
                ||||| ||| |||  |||||||||||||| |||||  ||| | ||||| u
                gacag gga uCC  UUCUGUCAUCUAAC UAUCa  auc u guguc c
------ccgcuugacu     c   g   -U              A     --   g -     c 

Annotation confidence High

Genome context

Contig239044: 265-386 [+]

Mature oan-let-7e-5p

• Accession: MIMAT0006984
• Description: Ornithorhynchus anatinus oan-let-7e-5p mature miRNA
• Sequence: 30 - UGAGGUAGUAGAUUGAAUAGUU - 51
• Evidence: experimental ; Illumina [1]

Mature oan-let-7e-3p

• Accession: MIMAT0006985
• Description: Ornithorhynchus anatinus oan-let-7e-3p mature miRNA
• Sequence: 80 - CUAUACAAUCUACUGUCUUUCC - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004