Stem-loop oan-mir-133b

Accession

MI0006780

Description

Ornithorhynchus anatinus oan-mir-133b precursor miRNA

Sequence

5889 reads, 110 reads per million, 5 experiments

cggcugaacccugcucugGCUGGUCAAACGGAACCAAGUCcgucugccugagaggUUUGGUCCCCUUCAACCAGCUAcagcggggccgacaucguccg
((((.....((((((.((((((((..((.((.((((((.((.(((.....))))))))))).)).))..)))))))).))))))))))..........

Structure

----------    ugaac      c        CA  C  A      U  g   g 
          cggc     ccugcu ugGCUGGU  AA GG ACCAAG Cc ucu c
          ||||     |||||| ||||||||  || || |||||| || ||| c
          gccg     gggcga AUCGACCA  UU CC UGGUUU gg aga u
gccugcuaca    -----      c        AC  C  C      -  -   g 

Annotation confidence Not enough data

Genome context

Contig26568: 7418-7515 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-133b

Mature oan-miR-133b-5p

• Accession: MIMAT0006996
• Description: Ornithorhynchus anatinus oan-miR-133b-5p mature miRNA
• Sequence: 19 - GCUGGUCAAACGGAACCAAGUC - 40
• Evidence: experimental ; Illumina [1]

Mature oan-miR-133b-3p

• Accession: MIMAT0006997
• Description: Ornithorhynchus anatinus oan-miR-133b-3p mature miRNA
• Sequence: 56 - UUUGGUCCCCUUCAACCAGCUA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004