miRBase entry: oan-mir-190b

Stem-loop oan-mir-190b


Accession
MI0006781
Description
Ornithorhynchus anatinus oan-mir-190b precursor miRNA


Sequence

672 reads, 35.0 reads per million, 5 experiments
ggggcgggggagccgcugcccaccucugugUGAUAUGUUUGAUAUUAGGUUGuuacgcuagaccucaccugaauaucagacauauuccuacagcggcugggcgacuacccgugcccuccuucucccucaacgaccuucagcccc
((((((.(((((....((((((((.(((((.(((((((((((((((((((.(((......)))...))))).))))))))))))))..))))).)).)))))).)).))).))))))...........................

Structure
---------------------------      g   -  ccgc      -  u     -U              -     --U   ac 
                           ggggcg ggg ag    ugccca cc cugug  GAUAUGUUUGAUAU UAGGU   Guu  g
                           |||||| ||| ||    |||||| || |||||  |||||||||||||| |||||   |||   
                           ucccgu ccc uc    gcgggu gg gacau  uuauacagacuaua gucca   cag  c
ccccgacuuccagcaacucccucuucc      g   a  ---a      c  c     cc              a     cuc   au 


Annotation confidence Not enough data
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Genome context
X5: 1119954-1120097 [+]

Database links

Mature oan-miR-190b-5p

Accession MIMAT0006998
Description Ornithorhynchus anatinus oan-miR-190b-5p mature miRNA
Sequence 31 - UGAUAUGUUUGAUAUUAGGUUG - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004