Stem-loop oan-mir-449c

Accession

MI0006791

Description

Ornithorhynchus anatinus oan-mir-449c precursor miRNA

Sequence

36 reads, 8 reads per million, 4 experiments

uccauuaagaaugugccgguuUGGCAGUGCUUUGCUAGCUGGcuguucaauaaaugauuccagcagcugguugcacgccccacugucacaauccaaacccaacgcgaaaggaaugga
((((((..((.((((.((((..(((.((((...((((((((.(((.(((.....)))...))))))))))).)))))))..)))).)))).)).....((.........))))))))

Structure

      ----------------aa  a    c    uU   A    UUU        G   --u   a 
uccauu                  ga ugug cggu  GGC GUGC   GCUAGCUG cug   uca u
||||||                  || |||| ||||  ||| ||||   |||||||| |||   ||| a
agguaa                  cu acac guca  ccg cacg   uggucgac gac   agu a
      ggaaagcgcaacccaaac  a    u    cc   -    --u        -   cuu   a 

Annotation confidence Not enough data

Genome context

Contig3432: 4405-4521 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oan-mir-449c

Mature oan-miR-449c

• Accession: MIMAT0007012
• Description: Ornithorhynchus anatinus oan-miR-449c mature miRNA
• Sequence: 22 - UGGCAGUGCUUUGCUAGCUGG - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004