Stem-loop oan-mir-194-2

Accession

MI0006795

Description

Ornithorhynchus anatinus oan-mir-194-2 precursor miRNA

Sequence

28840 reads, 513 reads per million, 5 experiments

uuguggagcccaccccuUGUAACAGCAACUCCAUGUGGAagggucuccugguuCCAGUGGAGCUGCUGUUAUCUUgggugggucauccggga
((.((((((((((((...(((((((((.((((((.((((((((...)))..))))))))))).)))))))))...))))))))..)))).))

Structure

  g    --        cuU         A      G     --   u 
uu ugga  gcccaccc   GUAACAGCA CUCCAU UGGAa  ggg  
|| ||||  ||||||||   ||||||||| |||||| |||||  ||| c
ag gccu  uggguggg   UAUUGUCGU GAGGUG ACCuu  ucc  
  g    ac        UUC         C      -     gg   u 

Annotation confidence High

Genome context

Contig35411: 246-337 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-194-2

Mature oan-miR-194-5p

• Accession: MIMAT0006999
• Description: Ornithorhynchus anatinus oan-miR-194-5p mature miRNA
• Sequence: 18 - UGUAACAGCAACUCCAUGUGGA - 39
• Evidence: experimental ; Illumina [1]

Mature oan-miR-194-3p

• Accession: MIMAT0007018
• Description: Ornithorhynchus anatinus oan-miR-194-3p mature miRNA
• Sequence: 54 - CCAGUGGAGCUGCUGUUAUCUU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004