miRBase entry: oan-mir-1371

Stem-loop oan-mir-1371


Accession
MI0006807
Description
Ornithorhynchus anatinus oan-mir-1371 precursor miRNA


Sequence

1861 reads, 1815.0 reads per million, 2 experiments
ugacuuuagaugaaaggcaguaaaacuauUAGAUGAGGACUCUGAGAagaggaggaagauagaagucuuaggacagacaaaacgacagucaugcgucaguuucaugaguaacauuaaaacuccaaaugcuguugauacauauuuguua
((((.....(((...(((((((...(((((.........((((....))))......)))))..((((......)))).(((((((........))).))))...((((.........))))....)))))))....)))....))))

Structure
    uuuag   -aaa       -------------------------------------------------------------aaa     AGAUGAGGA    G 
ugac     aug    ggcagua                                                                cuauU         CUCU A
||||     |||    |||||||                                                                |||||         ||||  
auug     uac    uugucgu                                                                gauag         gaga G
    -uuua   auag       aaaccucaaaauuacaaugaguacuuugacugcguacugacagcaaaacagacaggauucugaa     ---aaggag    A 


Annotation confidence Not enough data
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Genome context
4: 84959693-84959837 [+]

Database links

Mature oan-miR-1371-5p

Accession MIMAT0007036
Description Ornithorhynchus anatinus oan-miR-1371-5p mature miRNA
Sequence 30 - UAGAUGAGGACUCUGAGA - 47
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004