Stem-loop oan-mir-125a

Accession

MI0006816

Description

Ornithorhynchus anatinus oan-mir-125a precursor miRNA

Literature search

1 open access papers mention oan-mir-125a
(36 sentences)

Sequence

292496 reads, 5692.0 reads per million, 5 experiments

aaggaauuacuugcugcgccccucucaaUCCCUGAGACCCUAACUUGUGAuguuucccguuuaaauccACGGGUUAGGUUCUUGGGAGCugugaguugugccuu
(((......)))...((((..(((.((.((((.((((.(((((((((((..................))))))))))).))))))))..)).)))..))))...

Structure

aaggaauuacuugcu    cc   u  -a    U    C           Auguuucc 
               gcgc  cuc ca  UCCC GAGA CCUAACUUGUG        c
               ||||  ||| ||  |||| |||| |||||||||||         
               cgug  gag gu  AGGG UUCU GGAUUGGGCAc        g
------------uuc    uu   u  CG    -    U           cuaaauuu 

Annotation confidence High

Genome context

11: 51864536-51864639 [+]

Mature oan-miR-125a-5p

• Accession: MIMAT0007048
• Description: Ornithorhynchus anatinus oan-miR-125a-5p mature miRNA
• Sequence: 29 - UCCCUGAGACCCUAACUUGUGA - 50
• Evidence: experimental ; Illumina [1]

Mature oan-miR-125a-3p

• Accession: MIMAT0007049
• Description: Ornithorhynchus anatinus oan-miR-125a-3p mature miRNA
• Sequence: 69 - ACGGGUUAGGUUCUUGGGAGC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004