miRBase entry: oan-mir-1374

Stem-loop oan-mir-1374


Accession
MI0006821
Description
Ornithorhynchus anatinus oan-mir-1374 precursor miRNA


Sequence

52 reads, 1.0 reads per million, 4 experiments
aggugccugaguggucagccUGUUUCCUGGGGCUUCCCUGUUGcugcuuccaguuugggucaCCAUGGGAGUUCCAGGGAUCGUGcugccccccuggguccu
(((.(((((.(.((.((((.((.((((((((((((((.....((((....)))).(((....))).)))))))))))))).)).)))).)).).))))))))

Structure
   u     a u  u    c  U              CUGUUGcugcuuccaguu   g 
agg gccug g gg cagc UG UUCCUGGGGCUUCC                  ugg u
||| ||||| | || |||| || ||||||||||||||                  |||  
ucc ugggu c cc gucG GC AGGGACCUUGAGGG                  ACC c
   -     c c  c    U  U              -----------------U   a 


Annotation confidence Medium
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Genome context
20: 2572356-2572457 [+]

Database links

Mature oan-miR-1374-5p

Accession MIMAT0007055
Description Ornithorhynchus anatinus oan-miR-1374-5p mature miRNA
Sequence 21 - UGUUUCCUGGGGCUUCCCUGUUG - 43
Evidence experimental
Illumina [1]

Mature oan-miR-1374-3p

Accession MIMAT0052422
Description Ornithorhynchus anatinus oan-miR-1374-3p mature miRNA
Sequence 63 - CCAUGGGAGUUCCAGGGAUCGUG - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004