Stem-loop oan-mir-222b-1

Accession

MI0006822

Description

Ornithorhynchus anatinus oan-mir-222b-1 precursor miRNA

Sequence

3242 reads, 78.0 reads per million, 5 experiments

caaaagagaguggaugcuaaucgucugcUCAGUAGUUGGUGUAGGAUCUGUcugacaugauuaagaacAGCUACAUCUGAUUACUGGGUcaccgauagcaucaacaaacuucugccg
((.(((...((.(((((((.(((...((((((((((((((((((...((((((..........)).))))))))))).)))))))))))...)))))))))).))...))).))...

Structure

---  a   aga  g       a   ucu           -       GAU    -  gaca 
   ca aag   gu gaugcua ucg   gcUCAGUAGUU GGUGUAG   CUGU cu    u
   || |||   || ||||||| |||   ||||||||||| |||||||   |||| ||     
   gu uuc   ca cuacgau agc   UGGGUCAUUAG CUACAUC   GAca ga    g
gcc  c   aaa  a       -   cac           U       ---    a  auua 

Annotation confidence High

Genome context

6: 13691867-13691981 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-222b-1

Mature oan-miR-222b-5p

• Accession: MIMAT0007056
• Description: Ornithorhynchus anatinus oan-miR-222b-5p mature miRNA
• Sequence: 29 - UCAGUAGUUGGUGUAGGAUCUGU - 51
• Evidence: experimental ; Illumina [1]

Mature oan-miR-222b-3p

• Accession: MIMAT0007057
• Description: Ornithorhynchus anatinus oan-miR-222b-3p mature miRNA
• Sequence: 69 - AGCUACAUCUGAUUACUGGGU - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004