Stem-loop oan-mir-181c

Accession

MI0006823

Description

Ornithorhynchus anatinus oan-mir-181c precursor miRNA

Sequence

125281 reads, 2573 reads per million, 5 experiments

uguugaaaagucacaaucAACAUUCAUUACUGUCGGUGGGUugugauaaaugaaaaaaaCUCACCGCCAGAUGAAUGCCAcuguggcuaggcaug
........(((((((.....(((((((..(((.(((((((((...............))))))))).))))))))))....))))))).......

Structure

uguugaaa       aucAA       UA   U         gugaua 
        agucaca     CAUUCAU  CUG CGGUGGGUu      a
        |||||||     |||||||  ||| |||||||||      a
        ucggugu     GUAAGUA  GAC GCCACUCaa      u
-guacgga       -cACC       --   C         aaaaag 

Annotation confidence Medium

Genome context

Contig65528: 2622-2716 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-181c

Mature oan-miR-181c-5p

• Accession: MIMAT0007058
• Description: Ornithorhynchus anatinus oan-miR-181c-5p mature miRNA
• Sequence: 19 - AACAUUCAUUACUGUCGGUGGGU - 41
• Evidence: experimental ; Illumina [1]

Mature oan-miR-181c-3p

• Accession: MIMAT0007059
• Description: Ornithorhynchus anatinus oan-miR-181c-3p mature miRNA
• Sequence: 60 - CUCACCGCCAGAUGAAUGCCA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004