Stem-loop oan-mir-1375

Accession

MI0006826

Description

Ornithorhynchus anatinus oan-mir-1375 precursor miRNA

Sequence

8635 reads, 110 reads per million, 5 experiments

ggauggccauucugcugcugcagcuacucUGCUUCCUGUUGGGCUUCCUGCggggagaguuccAGGGAGCGCAGCAAGAAGAGAaucagcuccugcugccgucaccgccgccgucc
(((((((....((((....))))....(((.((((.(((((.((((((((.(((.....))))))))))).))))).)))))))..((((....))))...........)))))))

Structure

       -----cauucugcugcugcagcuac   G    C     G        C   g 
ggauggc                         ucU CUUC UGUUG GCUUCCUG ggg a
|||||||                         ||| |||| ||||| |||||||| ||| g
ccugccg                         AGA GAAG ACGAC CGAGGGAc cuu a
       ccgccacugccgucguccucgacua   -    A     G        -   g 

Annotation confidence High

Genome context

Contig7095: 17786-17901 [+]

Mature oan-miR-1375-5p

• Accession: MIMAT0007064
• Description: Ornithorhynchus anatinus oan-miR-1375-5p mature miRNA
• Sequence: 30 - UGCUUCCUGUUGGGCUUCCUGC - 51
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1375-3p

• Accession: MIMAT0007065
• Description: Ornithorhynchus anatinus oan-miR-1375-3p mature miRNA
• Sequence: 64 - AGGGAGCGCAGCAAGAAGAGA - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004