Stem-loop oan-mir-1421k-1

Accession

MI0006827

Description

Ornithorhynchus anatinus oan-mir-1421k-1 precursor miRNA

Sequence

302 reads, 133 reads per million, 4 experiments

gaucccggcugaccuacggcauggugugAACAGGUUACCUGUGGUGCAGUguaguaguggaaaaagcUGCAUCAUGUGUGACCUGCCCacaccgcgccgugucucuccgucuggagauu
..........(((..(((((.(((((((..((((((((.(((((((((((...............))))))))))).))))))))..))))))).))))))))(((((....)))))..

Structure

------gaucccggcu   cu     a       AA        C           guagua 
                gac  acggc uggugug  CAGGUUAC UGUGGUGCAGU      g
                |||  ||||| |||||||  |||||||| |||||||||||      u
                cug  ugccg gccacaC  GUCCAGUG GUACUACGUcg      g
uuagaggucugccucu   --     c       CC        U           aaaaag 

Annotation confidence Not enough data

Genome context

Contig7160: 751-869 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from oan-mir-1421k-1

Mature oan-miR-1421k-5p

• Accession: MIMAT0007066
• Description: Ornithorhynchus anatinus oan-miR-1421k-5p mature miRNA
• Sequence: 29 - AACAGGUUACCUGUGGUGCAGU - 50
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1421k-1-3p

• Accession: MIMAT0007067
• Description: Ornithorhynchus anatinus oan-miR-1421k-1-3p mature miRNA
• Sequence: 68 - UGCAUCAUGUGUGACCUGCCC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004