Stem-loop oan-mir-590

Accession

MI0006843

Description

Ornithorhynchus anatinus oan-mir-590 precursor miRNA

Sequence

19171 reads, 396 reads per million, 5 experiments

uuuagaaacaagccuaagccaaucagaaauGAGCUUAUCCAUAAAAGUACAGuaucgucaguaaaccugUACUUUUAUGGAUAAGCUAGUcucugauugaaacacgcaacaagucuccucaa
(((((........))))).((((((((.((.(((((((((((((((((((((..............))))))))))))))))))))).)).)))))))).......................

Structure

----uuuagaaacaagccuaagc        a  G                     uaucgu 
                       caaucaga au AGCUUAUCCAUAAAAGUACAG      c
                       |||||||| || |||||||||||||||||||||       
                       guuagucu UG UCGAAUAGGUAUUUUCAUguc      a
aacuccucugaacaacgcacaaa        c  A                     caaaug 

Annotation confidence High

Genome context

Contig7702: 7118-7239 [-]

Mature oan-miR-590-5p

• Accession: MIMAT0007096
• Description: Ornithorhynchus anatinus oan-miR-590-5p mature miRNA
• Sequence: 31 - GAGCUUAUCCAUAAAAGUACAG - 52
• Evidence: experimental ; Illumina [1]

Mature oan-miR-590-3p

• Accession: MIMAT0007097
• Description: Ornithorhynchus anatinus oan-miR-590-3p mature miRNA
• Sequence: 70 - UACUUUUAUGGAUAAGCUAGU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004