miRBase entry: oan-mir-1382

Stem-loop oan-mir-1382


Accession
MI0006860
Description
Ornithorhynchus anatinus oan-mir-1382 precursor miRNA


Sequence

15 reads, 0.0 reads per million, 3 experiments
gacgguaccugggaggggggcgcggagggaucugugggagagggugcggccgcaaggacuggugucccgggaccggggcgcuucauucgaguguuggcagGCCGUGGUCGUGCAGGGCcgcugcggcucagcucagacuuggugcaacc
....(((((.(((((.(((.(((((.((..((((((.((......((((((((.((.((((((((((((....))))))))).......))).)).)).))))))..)).)))))).)).))))).)))..)))...)).)))))....

Structure
gacg     u  ---   -g   g     a  ga      g  gagggu      -  a  g   -------         g 
    guacc gg   gag  ggg cgcgg gg  ucugug ga      gcggcc gc ag acu       ggugucccg g
    ||||| ||   |||  ||| ||||| ||  |||||| ||      |||||| || || |||       |||||||||  
    cgugg uc   cuc  cuc gcguc cC  GGACGU CU      UGCCGg cg uu uga       ucgcggggc a
ccaa     u  aga   ga   g     g  -G      G  ----GG      a  g  g   gcuuacu         c 


Annotation confidence Not enough data
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Genome context
4: 40540891-40541039 [+]

Database links

Mature oan-miR-1382-3p

Accession MIMAT0007124
Description Ornithorhynchus anatinus oan-miR-1382-3p mature miRNA
Sequence 101 - GCCGUGGUCGUGCAGGGC - 118
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004