miRBase entry: oan-mir-92a-2

Stem-loop oan-mir-92a-2


Accession
MI0006875
Description
Ornithorhynchus anatinus oan-mir-92a-2 precursor miRNA


Sequence

57196 reads, 1262.0 reads per million, 5 experiments
gccaggaaaagucaaaccccuuucuacgcAGGUUGGGAUCAGUUGCAAUGCUuuguuugucuauggUAUUGCACUUGUCCCGGCCUGUugagguugcuggggaucguggc
((((.((.........((((..(((..((((((((((((.(((.((((((((.((......)).))))))))))).))))))))))))..))).....)))).)).))))

Structure
    g  aaagucaaa    ---uu   ac            C   U        u  uu 
gcca ga         cccc     ucu  gcAGGUUGGGAU AGU GCAAUGCU ug  u
|||| ||         ||||     |||  |||||||||||| ||| |||||||| ||   
cggu cu         gggg     gga  UGUCCGGCCCUG UCA CGUUAUgg au  g
    g  --------a    ucguu   gu            U   -        u  cu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
10: 22689271-22689380 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from oan-mir-92a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-92a-2-5p

Accession MIMAT0009170
Description Ornithorhynchus anatinus oan-miR-92a-2-5p mature miRNA
Sequence 30 - AGGUUGGGAUCAGUUGCAAUGCU - 52
Evidence experimental
Illumina [1]

Mature oan-miR-92a-3p

Accession MIMAT0006858
Description Ornithorhynchus anatinus oan-miR-92a-3p mature miRNA
Sequence 67 - UAUUGCACUUGUCCCGGCCUGU - 88
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004