miRBase entry: oan-mir-454

Stem-loop oan-mir-454


Accession
MI0006881
Description
Ornithorhynchus anatinus oan-mir-454 precursor miRNA


Sequence

8069 reads, 138.0 reads per million, 5 experiments
uuaccagauccuggaACCCUAUCGAUAUUGUCUCUGCUguguaaauagcugugagUAGUGCAAUAUUGCUUAUAGGGUuuuaguguuugggaaa
...((((((.((((((((((((((((((((((((.(((((....)))))...)))....)))))))))...)))))))))))).))))))....

Structure
-uua      c            ---         ----   --U     g 
    ccagau cuggaACCCUAU   CGAUAUUGU    CUC   GCUgu u
    |||||| ||||||||||||   |||||||||    |||   |||||  
    gguuug gauuuUGGGAUA   GUUAUAACG    gag   cgaua a
aaag      u            UUC         UGAU   ugu     a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
17: 11797209-11797302 [-]

Database links

Mature oan-miR-454-5p

Accession MIMAT0007156
Description Ornithorhynchus anatinus oan-miR-454-5p mature miRNA
Sequence 16 - ACCCUAUCGAUAUUGUCUCUGCU - 38
Evidence experimental
Illumina [1]

Mature oan-miR-454-3p

Accession MIMAT0007157
Description Ornithorhynchus anatinus oan-miR-454-3p mature miRNA
Sequence 56 - UAGUGCAAUAUUGCUUAUAGGGU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004