Stem-loop oan-mir-21

Accession

MI0006883

Description

Ornithorhynchus anatinus oan-mir-21 precursor miRNA

Literature search

1 open access papers mention oan-mir-21
(51 sentences)

Sequence

1545248 reads, 42044.0 reads per million, 5 experiments

aucuccacgacuggaccauccuaucggaUAGCUUAUCAGACUGAUGUUGAcuguuagaucuccuggCAACAGCAGUCGAUGGGCUGUCugacauuuugguaucugucauccgau
........(((.((((((.....((((((((((((((.(((((.(((....((((((.....))))))))).))))))))))))))))))).....)))).)).))).......

Structure

aucuccac   u  -    uccua              A     A   UGAc      a 
        gac gg acca     ucggaUAGCUUAUC GACUG UGU    uguuag u
        ||| || ||||     |||||||||||||| ||||| |||    |||||| c
        cug cu uggu     aguCUGUCGGGUAG CUGAC ACA    ACgguc u
-uagccua   u  a    uuuac              -     G   ----      c 

Annotation confidence High

Genome context

17: 12227458-12227571 [+]

Mature oan-miR-21-5p

• Accession: MIMAT0007160
• Description: Ornithorhynchus anatinus oan-miR-21-5p mature miRNA
• Sequence: 29 - UAGCUUAUCAGACUGAUGUUGA - 50
• Evidence: experimental ; Illumina [1]

Mature oan-miR-21-3p

• Accession: MIMAT0007161
• Description: Ornithorhynchus anatinus oan-miR-21-3p mature miRNA
• Sequence: 67 - CAACAGCAGUCGAUGGGCUGUC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004