Stem-loop oan-mir-1389

Accession

MI0006891

Description

Ornithorhynchus anatinus oan-mir-1389 precursor miRNA

Sequence

137 reads, 5 reads per million, 5 experiments

cggaauuggccgaucccggcuuguuCCUCGGCGUUUCCGGCACGGCCAagugaugcguuucugACUGGGCUGGAAAAUCGAGUGAacuggccagggagcuccaggucagccg
(((..((((((..((((((((.(((((((((..((((((((.(((.((...((......)))).))).)))))))).))))).)))).)))).))))......)))))))))

Structure

   aa      ----ga    -    u    -     CG        A   C  agu  ug 
cgg  uuggcc      uccc ggcu guuC CUCGG  UUUCCGGC CGG CA   ga  c
|||  ||||||      |||| |||| |||| |||||  |||||||| ||| ||   ||   
gcc  gacugg      aggg ccgg caAG GAGCU  AAAGGUCG GUC gu   cu  g
   --      accucg    a    u    U     -A        G   A  ---  uu 

Annotation confidence Not enough data

Genome context

Ultra341: 9461664-9461775 [+]

Mature oan-miR-1389-3p

• Accession: MIMAT0007174
• Description: Ornithorhynchus anatinus oan-miR-1389-3p mature miRNA
• Sequence: 64 - ACUGGGCUGGAAAAUCGAGUGA - 85
• Evidence: experimental ; Illumina [1-2]

Mature oan-miR-1389-5p

• Accession: MIMAT0026758
• Description: Ornithorhynchus anatinus oan-miR-1389-5p mature miRNA
• Sequence: 26 - CCUCGGCGUUUCCGGCACGGCCA - 48
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45