miRBase entry: oan-mir-383

Stem-loop oan-mir-383


Accession
MI0006900
Description
Ornithorhynchus anatinus oan-mir-383 precursor miRNA


Sequence

8948 reads, 207.0 reads per million, 5 experiments
cgcaagagaaucucggagucaccugcuccucAGAUCAGAAGGUGAUUGUGGCUuuggguagcuacuaagcagCCACAACACUGCCUGGUCAGAAagagcaaguggacaagccuuuugug
((((((((...((.....((((.(((((.((.((((((..((((.((((((((((((.......))))..))))))))))))..)))))).))..))))).))))...)).))))))))

Structure
        aau  cggag    c     -c  A      AA    A        --    gu 
cgcaagag   cu     ucac ugcuc  uc GAUCAG  GGUG UUGUGGCU  uugg  a
||||||||   ||     |||| |||||  || ||||||  |||| ||||||||  ||||  g
guguuuuc   ga     ggug acgag  AG CUGGUC  UCAC AACACCga  aauc  c
        --c  --aca    a     aA  A      CG    -        cg    au 


Annotation confidence High
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Genome context
12: 57271924-57272042 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-383
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-383-5p

Accession MIMAT0007189
Description Ornithorhynchus anatinus oan-miR-383-5p mature miRNA
Sequence 32 - AGAUCAGAAGGUGAUUGUGGCU - 53
Evidence experimental
Illumina [1]

Mature oan-miR-383-3p

Accession MIMAT0007190
Description Ornithorhynchus anatinus oan-miR-383-3p mature miRNA
Sequence 73 - CCACAACACUGCCUGGUCAGAA - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004