miRBase entry: oan-mir-135a

Stem-loop oan-mir-135a


Accession
MI0006902
Description
Ornithorhynchus anatinus oan-mir-135a precursor miRNA


Sequence

16413 reads, 346.0 reads per million, 5 experiments
ugaucaagauaaauucacucuaguguuuUAUGGCUUUUUAUUCCUAUGUGAuaguaauaaagucucAUGUAGGGAUGGAAGCCAUGAAauacauugugaaaaaucauca
.......(((...(((((....((((((((((((((((.((((((((((((.(.(.....).).))))))))))))))))))))))))))))...)))))..)))....

Structure
ugaucaa   aaa     ucua                U            u g a 
       gau   uucac    guguuuUAUGGCUUUU AUUCCUAUGUGA a u a
       |||   |||||    |||||||||||||||| |||||||||||| | | u
       cua   aagug    cauaAAGUACCGAAGG UAGGGAUGUAcu u a a
---acua   -aa     -uua                -            c g a 


Annotation confidence High
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Genome context
14: 36251149-36251257 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-135a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-135a-5p

Accession MIMAT0061405
Description Ornithorhynchus anatinus oan-miR-135a-5p mature miRNA
Sequence 29 - UAUGGCUUUUUAUUCCUAUGUGA - 51
Evidence experimental
Illumina [1]

Mature oan-miR-135a-3p

Accession MIMAT0007193
Description Ornithorhynchus anatinus oan-miR-135a-3p mature miRNA
Sequence 67 - AUGUAGGGAUGGAAGCCAUGAA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004