Stem-loop oan-mir-1398

Accession

MI0006909

Description

Ornithorhynchus anatinus oan-mir-1398 precursor miRNA

Sequence

138 reads, 3 reads per million, 4 experiments

uggcaaaauccauccucucagCCCCUUUGUCAAUUACACUGCggagcuagggcagcAGUGUUGUCGACUAGAGGACCGaggagauggaacuucgggaaagauggguca
.......(((((((.........((((((((.((.(((((((...((....)).))))))).)).))).))))).((((((........))))))....)))))))..

Structure

uggcaaa       ----------------cucucagCC     -   A  U       gga  u 
       auccauc                         CCUUU GUC AU ACACUGC   gc a
       |||||||                         ||||| ||| || |||||||   ||  
       uggguag                         GGAGA CAG UG UGUGAcg   cg g
-----ac       aaagggcuucaagguagaggaGCCA     U   C  U       --a  g 

Annotation confidence High

Genome context

Ultra462: 3184108-3184215 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-1398

Mature oan-miR-1398-5p

• Accession: MIMAT0007201
• Description: Ornithorhynchus anatinus oan-miR-1398-5p mature miRNA
• Sequence: 22 - CCCCUUUGUCAAUUACACUGC - 42
• Evidence: experimental ; Illumina [1-2]

Mature oan-miR-1398-3p

• Accession: MIMAT0026760
• Description: Ornithorhynchus anatinus oan-miR-1398-3p mature miRNA
• Sequence: 57 - AGUGUUGUCGACUAGAGGACCG - 78
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45