Stem-loop oan-mir-1401

Accession

MI0006913

Description

Ornithorhynchus anatinus oan-mir-1401 precursor miRNA

Sequence

8692 reads, 217 reads per million, 4 experiments

gaggucaugcgaggauagcugUUUCUGACCACCACCGGCCUCUuccuucccaucaguguuagAGGCCAAUGGCAGUCAGAAAUggcucgccuuggcucuc
(((((((....(((..(((((((((((((..(((..(((((((..(...........)..)))))))..)))..)))))))))))))..))))))).)))

Structure

   -    ugcg   au             CA   CC       uc uucc 
gag guca    agg  agcugUUUCUGAC  CCA  GGCCUCU  c    c
||| ||||    |||  |||||||||||||  |||  |||||||  |    a
cuc cggu    ucc  ucggUAAAGACUG  GGU  CCGGAga  g    u
   u    ----   gc             AC   AA       uu ugac 

Annotation confidence High

Genome context

Ultra474: 4573082-4573181 [+]

Mature oan-miR-1401-5p

• Accession: MIMAT0007207
• Description: Ornithorhynchus anatinus oan-miR-1401-5p mature miRNA
• Sequence: 22 - UUUCUGACCACCACCGGCCUCU - 43
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1401-3p

• Accession: MIMAT0007208
• Description: Ornithorhynchus anatinus oan-miR-1401-3p mature miRNA
• Sequence: 63 - AGGCCAAUGGCAGUCAGAAAU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004