miRBase entry: oan-mir-1402

Stem-loop oan-mir-1402


Accession
MI0006914
Description
Ornithorhynchus anatinus oan-mir-1402 precursor miRNA


Sequence


uacagacaggaGCGGAGAAGGUGGAACUGuggcugcccgcagagugaugggaagacuccaucagcuggcccugauagggcuccugcugcuuugccucagcccugggcagcucugcgagaccuguggug
(((..(((((.((((((.........((((((....))))))(((((((((.....))))))).)).((((....((((((...((......))...))))))))))..))))))....))))).)))

Structure
   ag     ---a      ----------------------------------------------------------AAGGUGGAA      c 
uac  acagg    GCGGAG                                                                   CUGugg u
|||  |||||    ||||||                                                                   ||||||  
gug  ugucc    cgucuc                                                                   gacgcc g
   -g     agag      gacgggucccgacuccguuucgucguccucgggauagucccggucgacuaccucagaaggguaguga      c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
3: 18397480-18397607 [+]

Database links

Mature oan-miR-1402-5p

Accession MIMAT0007209
Description Ornithorhynchus anatinus oan-miR-1402-5p mature miRNA
Sequence 12 - GCGGAGAAGGUGGAACUG - 29
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004