Stem-loop oan-mir-1406

Accession

MI0006918

Description

Ornithorhynchus anatinus oan-mir-1406 precursor miRNA

Sequence

333 reads, 9 reads per million, 5 experiments

cacugguuagucucuugacauccaggaugAUUUAGGUGCCAGAGAGAGAagcgauagucuacaccuccuCCUCUCUCCACCACCUAAAUGAaucugguuguuacagcaacaucagagaggggagagauggagccagg
..((((((.(((((((((((.(((((.(.(((((((((...(((((((.((.((...........)))).)))))))...))))))))).).))))).))))...................)))))))..)))))).

Structure

ca      -a       -------------------    u     a g         CCA       A  c  uagu 
  cugguu  gucucuu                   gaca ccagg u AUUUAGGUG   GAGAGAG ag ga    c
  ||||||  |||||||                   |||| ||||| | |||||||||   ||||||| || ||    u
  gaccga  uagagag                   uugu ggucu A UAAAUCCAC   CUCUCUC uc cu    a
-g      gg       gggagagacuacaacgaca    u     a G         CAC       C  -  ccac 

Annotation confidence High

Genome context

Ultra5: 5325097-5325233 [-]

Mature oan-miR-1406-5p

• Accession: MIMAT0007214
• Description: Ornithorhynchus anatinus oan-miR-1406-5p mature miRNA
• Sequence: 30 - AUUUAGGUGCCAGAGAGAGA - 49
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1406-3p

• Accession: MIMAT0007215
• Description: Ornithorhynchus anatinus oan-miR-1406-3p mature miRNA
• Sequence: 70 - CCUCUCUCCACCACCUAAAUGA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004