Stem-loop oan-mir-217

Accession

MI0006923

Description

Ornithorhynchus anatinus oan-mir-217 precursor miRNA

Literature search

1 open access papers mention oan-mir-217
(1 sentences)

Sequence

8272 reads, 127.0 reads per million, 4 experiments

ccgagccgaguuuuugaugucgcagaUACUGCAUCAGGAACUGAUUGGAuaauaaucagucacCAUCAGUUCCUAAUGCAUUGCCuucagcaucuaaacaagcuuccaug
..((((...((((..(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).))))).))))..)))).....

Structure

---cc    cga    uu     c c  a  C     C          U -   aau 
     gagc   guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAu   a
     ||||   ||||  ||||| | || || ||||| |||||||||| | |||    
     uucg   caaa  cuacg c uC GU ACGUA UCCUUGACUA c cug   a
guacc    -aa    -u     a u  C  U     A          C a   acu 

Annotation confidence Not enough data

Genome context

9: 56814295-56814404 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-217

Mature oan-miR-217-5p

• Accession: MIMAT0007221
• Description: Ornithorhynchus anatinus oan-miR-217-5p mature miRNA
• Sequence: 27 - UACUGCAUCAGGAACUGAUUGGA - 49
• Evidence: experimental ; Illumina [1]

Mature oan-miR-217-3p

• Accession: MIMAT0007222
• Description: Ornithorhynchus anatinus oan-miR-217-3p mature miRNA
• Sequence: 64 - CAUCAGUUCCUAAUGCAUUGCC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004