Stem-loop oan-mir-146a

Accession

MI0006931

Description

Ornithorhynchus anatinus oan-mir-146a precursor miRNA

Sequence

12564 reads, 314 reads per million, 5 experiments

uucaacuuggagauucaguacgcucagcuuUGAGAACUGAAUUCCACGGGUUgugauugcaacucugacagACCCGUGGGGCUCAGUUCUUGAgcugggguaccucuguccucgcagaauccaggagaa
.....((((((......((((.((((((((.(((((((((.(((((((((((((.............))).)))))))))).))))))))))))))))))))).(((((....))))).))))))....

Structure

uucaa      ----------gauuca    g        U         A          -   gauug 
     cuugga                guac cucagcuu GAGAACUGA UUCCACGGGU Ugu     c
     ||||||                |||| |||||||| ||||||||| |||||||||| |||     a
     ggaccu                caug gggucgAG UUCUUGACU GGGGUGCCCA aca     a
-aaga      aagacgcuccugucuc    -        -         C          g   gucuc 

Annotation confidence High

Genome context

X1: 22404743-22404871 [-]

Mature oan-miR-146a-5p

• Accession: MIMAT0007230
• Description: Ornithorhynchus anatinus oan-miR-146a-5p mature miRNA
• Sequence: 31 - UGAGAACUGAAUUCCACGGGUU - 52
• Evidence: experimental ; Illumina [1]

Mature oan-miR-146a-3p

• Accession: MIMAT0007231
• Description: Ornithorhynchus anatinus oan-miR-146a-3p mature miRNA
• Sequence: 72 - ACCCGUGGGGCUCAGUUCUUGA - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004