Stem-loop oan-mir-1421x

Accession

MI0006938

Description

Ornithorhynchus anatinus oan-mir-1421x precursor miRNA

Sequence

173 reads, 94 reads per million, 3 experiments

ggcacagugugagUAGGUCACGUGUGGUGCAGCAUgauaauggaauaugcUGCAUCGUGUGUGACCUCCCUAcacugcacuguguc
((((((((((.(((((((((((((((((((((((((.........))))))))))))))))))))))......)))))))))))))

Structure

          g   ------                      aua 
ggcacagugu agU      AGGUCACGUGUGGUGCAGCAUg   a
|||||||||| |||      ||||||||||||||||||||||   u
cugugucacg uca      UCCAGUGUGUGCUACGUcguau   g
          -   cAUCCC                      aag 

Annotation confidence Not enough data

Genome context

X1: 44284340-44284425 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from oan-mir-1421x

Mature oan-miR-1421x-5p

• Accession: MIMAT0007242
• Description: Ornithorhynchus anatinus oan-miR-1421x-5p mature miRNA
• Sequence: 14 - UAGGUCACGUGUGGUGCAGCAU - 35
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1421x-3p

• Accession: MIMAT0007243
• Description: Ornithorhynchus anatinus oan-miR-1421x-3p mature miRNA
• Sequence: 51 - UGCAUCGUGUGUGACCUCCCUA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004