Stem-loop oan-mir-1418

Accession

MI0006959

Description

Ornithorhynchus anatinus oan-mir-1418 precursor miRNA

Sequence

124 reads, 220 reads per million, 1 experiments

cuuccUAACUUCAGCGCCGAGGGUGGACguggcccuggccgaaggccgccucugccgcgguuagccaccgccuccccgcugccccUCCGGUCCGGGGUCCGAGCCcuuggccaucagugaccag
.......(((...(.(((((((((...((.(((((((((((..(((.((.......(((((.....)))))......)).)))....))).)))))))))).))))))))))...)))......

Structure

cuuccUA   UCA C         GGA  u        -   --aa   c  cucugcc     u 
       ACU   G GCCGAGGGU   Cg ggcccugg ccg    ggc gc       gcggu a
       |||   | |||||||||   || |||||||| |||    ||| ||       ||||| g
       uga   c cgguucCCG   GC CUGGGGCC GGC    ccg cg       cgcca c
-gaccag   cua -         --A  -        U   CUcc   u  -ccccuc     c 

Annotation confidence Not enough data

Genome context

Contig4692: 20273-20396 [-]

Mature oan-miR-1418-5p

• Accession: MIMAT0007276
• Description: Ornithorhynchus anatinus oan-miR-1418-5p mature miRNA
• Sequence: 6 - UAACUUCAGCGCCGAGGGUGGAC - 28
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1418-3p

• Accession: MIMAT0007277
• Description: Ornithorhynchus anatinus oan-miR-1418-3p mature miRNA
• Sequence: 86 - UCCGGUCCGGGGUCCGAGCC - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004