Stem-loop oan-let-7f-1

Accession

MI0006962

Description

Ornithorhynchus anatinus oan-let-7f-1 precursor miRNA

Literature search

1 open access papers mention oan-let-7f-1
(1 sentences)

Sequence

2569439 reads, 54579.0 reads per million, 5 experiments

uuugcuaaggauggauugcucuggcagagUGAGGUAGUAGAUUGUAUAGUUuuuaggguaguaauuuuauccuuuuccggagauaaCUAUACAAUCUAUUGCCUUCCcugaggagcagaauuucuacggugguuucuauccggguuuga
...(((..((((((((((((((..(((.(.(((((((((((((((((((((.(((((((((.....)))))))........)).))))))))))))))))))))).)))).)))))))................))))))).)))....

Structure

-uuu   aa       ----------------       gg   a U                     u  --------       u 
    gcu  ggaugga                uugcucu  cag g GAGGUAGUAGAUUGUAUAGUU uu        aggguag a
    |||  |||||||                |||||||  ||| | ||||||||||||||||||||| ||        ||||||| a
    ugg  ccuaucu                gacgagg  guc C UUCCGUUAUCUAACAUAUCaa ag        uccuauu u
aguu   -g       uugguggcaucuuuaa       -a   - C                     u  aggccuuu       u 

Annotation confidence High

Genome context

X1: 77606447-77606595 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oan-let-7f-1

Mature oan-let-7f-5p

• Accession: MIMAT0007179
• Description: Ornithorhynchus anatinus oan-let-7f-5p mature miRNA
• Sequence: 30 - UGAGGUAGUAGAUUGUAUAGUU - 51
• Evidence: experimental ; Illumina [1]

Mature oan-let-7f-1-3p

• Accession: MIMAT0007180
• Description: Ornithorhynchus anatinus oan-let-7f-1-3p mature miRNA
• Sequence: 87 - CUAUACAAUCUAUUGCCUUCC - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004