Stem-loop osa-MIR1424

Accession

MI0006964

Description

Oryza sativa osa-MIR1424 precursor miRNA

Sequence

ccagcuaguuuagcucccaggccagucaagguagaggcagcucaaaguguagucaucucuugaucguugauugcuccaguccuaucccaugcuccuccuugagcucccaaucauugagcucucggauccucucugcucuucucugaucuggugucguuccaguuuccaaacauguugcagaaugaagaacacugaacaacaagauuauaagguagguaaguaguugaucauuucagguuuccagagaugauaaagcaaucagggaugcAUGCACACUGAUGCUGAUUGUacaaacuccaa
..(((((...)))))....((..(((....(((.(..(((((((..(((((..((((.((((((.((((((((((.....((((((..(((.((.(((..((((((.........))))))..)))...((..((.(((((((((..((((.......))))...............))))..))))).))..)).......)).)))..))))))..))))))).((((((((.((...)).))))))))..))).))))))))))..)))))..))).))))..).)))..)))))..

Structure

ccagcuaguuuagcuccca  cc   caag   g gg    -   aa     gu    u      c   ----------------------------       ccagu      cc   c  cuccuugagcucccaaucauugagcucucggauccucucugcucuucucugau 
                   gg  agu    gua a  cagc uca  gugua  cauc cuugau guu                            gauugcu     ccuauc  aug uc                                                     c
                   ||  |||    ||| |  |||| |||  |||||  |||| |||||| |||                            |||||||     ||||||  ||| ||                                                      
                   cc  uca    caU U  GUCG AGU  CACGU  guag ggacua cga                            uugauga     ggaugg  uau ag                                                     u
-----------------aa  --   --aa   G UA    U   CA     Ac    -      a   aauaguagagaccuuuggacuuuacuag       ---au      aa   u  aacaacaagucacaagaaguaagacguuguacaaaccuuugaccuugcugugg 

Annotation confidence Not enough data

Genome context

Chr7: 26662355-26662654 [-]

Mature osa-miR1424

• Accession: MIMAT0005958
• Description: Oryza sativa osa-miR1424 mature miRNA
• Sequence: 269 - AUGCACACUGAUGCUGAUUGU - 289
• Evidence: experimental ; MPSS [1], Northern [1]

References

1. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956