miRBase entry: oan-mir-1422b-2

Stem-loop oan-mir-1422b-2


Accession
MI0007004
Description
Ornithorhynchus anatinus oan-mir-1422b-2 precursor miRNA


Sequence

1814 reads, 1178.0 reads per million, 3 experiments
gaguagccacugugguucugguuuCAAUCCAUACCAAGAUUUUCUAUguguacaaauaaucuAGAAAAUCUUGUGUGGAUUGAUaccagggucagauuauauacuc
(((((.....(.((((((((((.(((((((((((.(((((((((((.((.........)).)))))))))))))))))))))).)))))))))).).....)))))

Structure
     gccac g          u           C           U  gua 
gagua     u ugguucuggu uCAAUCCAUAC AAGAUUUUCUA gu   c
|||||     | |||||||||| ||||||||||| ||||||||||| ||   a
cucau     a acugggacca AGUUAGGUGUG UUCUAAAAGAu ua   a
     auauu g          U           -           c  aua 


Annotation confidence High
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Genome context
X1: 94741836-94741941 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from oan-mir-1422b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1422b-2-5p

Accession MIMAT0009175
Description Ornithorhynchus anatinus oan-miR-1422b-2-5p mature miRNA
Sequence 25 - CAAUCCAUACCAAGAUUUUCUAU - 47
Evidence experimental
Illumina [1]

Mature oan-miR-1422b-3p

Accession MIMAT0006886
Description Ornithorhynchus anatinus oan-miR-1422b-3p mature miRNA
Sequence 63 - AGAAAAUCUUGUGUGGAUUGAU - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004