Stem-loop osa-MIR1436

Accession

MI0007022

Description

Oryza sativa osa-MIR1436 precursor miRNA

Literature search

15 open access papers mention osa-MIR1436
(49 sentences)

Sequence

58235 reads, 227.0 reads per million, 142 experiments

aguuuaugugcUACUCCCUCCGUCCCAUAAUAUuaaaaccuaggacuggauaggacguuucauaguacaaugacucagagucauuguacuaugaaacguccuauccaguccuagguuuuaacAUUAUGGGACGGAGGGAGUAGUcucaaccuauauaaacu
(((((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((...))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))........)))))))))

Structure

         --------                      A                                           c 
aguuuaugu        gcUACUCCCUCCGUCCCAUAAU Uuaaaaccuaggacuggauaggacguuucauaguacaaugacu  
|||||||||        |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| a
ucaaauaua        UGAUGAGGGAGGCAGGGUAUUA aauuuuggauccugaccuauccugcaaaguaucauguuacuga  
         uccaacuc                      c                                           g 

Annotation confidence Medium

Genome context

1: 20316586-20316746 [-]

Mature osa-miR1436-5p

• Accession: MIMAT0056032
• Description: Oryza sativa osa-miR1436-5p mature miRNA
• Sequence: 12 - UACUCCCUCCGUCCCAUAAUAU - 33
• Evidence: experimental ; unknown

Mature osa-miR1436-3p

• Accession: MIMAT0005987
• Description: Oryza sativa osa-miR1436-3p mature miRNA
• Sequence: 123 - AUUAUGGGACGGAGGGAGUAGU - 144
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25