Stem-loop osa-MIR1437a

Accession

MI0007024

Description

Oryza sativa osa-MIR1437a precursor miRNA

Literature search

1 open access papers mention osa-MIR1437a
(1 sentences)

Sequence

50 reads, 35 reads per million, 2 experiments

gcgcgcggggagggagggaacggugccuagugcggcaccggagcucgccagcacgcaggagugaggugaggaggacggcggccagggcgcggagagcuugccggcgcuccgccaccgccgcuaccuccuuccgcgugcuggcgagcUCCGGCGCCGCACUAGGCACUGuuuccucccuccccacgcgc
(((((.((((((((((((((((((((((((((((((.(((((((((((((((((((.(((........((((((..((((((..((..((((((.(((....))).))))))..)))))))).)))))))))))))))))))))))))))).)))))))))))))))))))))))))))))).)))))

Structure

     c                              a                   a   gugaggug      ac      ca  gc      a   u 
gcgcg ggggagggagggaacggugccuagugcggc ccggagcucgccagcacgc gga        aggagg  ggcggc  gg  gcggag gcu g
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||        ||||||  ||||||  ||  |||||| |||  
cgcgc ccccucccuccuuuGUCACGGAUCACGCCG GGCCUcgagcggucgugcg ccu        uccucc  ucgccg  cc  cgccuc cgg c
     a                              C                   -   --------      -a      --  ac      g   c 

Annotation confidence Not enough data

Genome context

Chr8: 3955902-3956089 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1437a

Mature osa-miR1437a

• Accession: MIMAT0005988
• Description: Oryza sativa osa-miR1437a mature miRNA
• Sequence: 147 - UCCGGCGCCGCACUAGGCACUG - 168
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25