Dead hairpin entry

Stem-loop osa-MIR1438

Accession

MI0007025

Description

Oryza sativa osa-MIR1438 precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention osa-MIR1438
(1 sentences)

Sequence

208 reads, 3.0 reads per million, 38 experiments

guugugauauaagguuuuAGGGUAAUUUUAUCAUUUUUAAgaaaacaaaauuuaauaccuucagauauucgguaucuauguaaaaaauuuuuagaucccucaauaaaauuuaauaccuaaaaucuaaacguauuaaauuuuguuuucuuaaaaauuauaaaauuacccuaauacauaauaccucaau
((((.(.(((...((.(((((((((((((((.((((((((((((((((((((((((((.((.((((.((.(((((.........(((((((.............))))))).))))).)).)))).)).)))))))))))))))))))))))))).))))))))))))))).))...))).).))))

Structure

    u a   aag  u               C                          c  c    a  c     cuauguaaa       uagau 
guug g uau   gu uuAGGGUAAUUUUAU AUUUUUAAgaaaacaaaauuuaauac uu agau uu gguau         aaauuuu     c
|||| | |||   || ||||||||||||||| |||||||||||||||||||||||||| || |||| || |||||         |||||||     c
uaac c aua   ca aaucccauuaaaaua uaaaaauucuuuuguuuuaaauuaug aa ucua aa ccaua         uuuaaaa     c
    u c   aua  u               u                          c  a    a  u     --------a       uaacu