Stem-loop osa-MIR1440a

Accession

MI0007028

Description

Oryza sativa osa-MIR1440a precursor miRNA

Literature search

3 open access papers mention osa-MIR1440a
(3 sentences)

Sequence

22482 reads, 97.0 reads per million, 142 experiments

aaaugccaaugcucaaauaccacucuccuaaauuuccauucccaaauaccaCCCGGGCCCACAUGUCAGCCUCAuccagcacagggucccacaucacuuuuguuugaauggaaAGUGAGGCUGACAUGUGGGCCCggaugguauuugguaaugaaaauuugggagagugguauuugagcacuggcauuu
((((((((.((((((((((((((((((((((((((.((((.((((((((((.(((((((((((((((((((((((((((((.(((((........)))))))).....))))...)))))))))))))))))))))).)))))))))).)))).)))))))))))))))))))))))))).))))))))

Structure

        a                          c    c          C                      ---    -----   c     ccc 
aaaugcca ugcucaaauaccacucuccuaaauuu cauu ccaaauacca CCGGGCCCACAUGUCAGCCUCA   ucca     gca agggu   a
|||||||| |||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||   ||||     ||| |||||    
uuuacggu acgaguuuauggugagaggguuuaaa guaa gguuuauggu ggCCCGGGUGUACAGUCGGAGU   aggu     ugu uuuca   c
        c                          a    u          a                      GAa    aaguu   -     cua 

Annotation confidence Low

Genome context

9: 5980506-5980694 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1440a

Mature osa-miR1440a-5p

• Accession: MIMAT0005990
• Description: Oryza sativa osa-miR1440a-5p mature miRNA
• Sequence: 52 - CCCGGGCCCACAUGUCAGCCUCA - 74
• Evidence: experimental ; cloned [1]

Mature osa-miR1440a-3p

• Accession: MIMAT0056035
• Description: Oryza sativa osa-miR1440a-3p mature miRNA
• Sequence: 114 - AGUGAGGCUGACAUGUGGGCCC - 135
• Evidence: experimental ; unknown

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25