Dead hairpin entry

Stem-loop osa-MIR1440a

Accession

MI0007028

Description

Oryza sativa osa-MIR1440a precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

3 open access papers mention osa-MIR1440a
(3 sentences)

Sequence

22482 reads, 97.0 reads per million, 142 experiments

aaaugccaaugcucaaauaccacucuccuaaauuuccauucccaaauaccaCCCGGGCCCACAUGUCAGCCUCAuccagcacagggucccacaucacuuuuguuugaauggaaAGUGAGGCUGACAUGUGGGCCCggaugguauuugguaaugaaaauuugggagagugguauuugagcacuggcauuu
((((((((.((((((((((((((((((((((((((.((((.((((((((((.(((((((((((((((((((((((((((((.(((((........)))))))).....))))...)))))))))))))))))))))).)))))))))).)))).)))))))))))))))))))))))))).))))))))

Structure

        a                          c    c          C                      ---    -----   c     ccc 
aaaugcca ugcucaaauaccacucuccuaaauuu cauu ccaaauacca CCGGGCCCACAUGUCAGCCUCA   ucca     gca agggu   a
|||||||| |||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||   ||||     ||| |||||    
uuuacggu acgaguuuauggugagaggguuuaaa guaa gguuuauggu ggCCCGGGUGUACAGUCGGAGU   aggu     ugu uuuca   c
        c                          a    u          a                      GAa    aaguu   -     cua