Stem-loop osa-MIR1441

Accession

MI0007029

Description

Oryza sativa osa-MIR1441 precursor miRNA

Literature search

4 open access papers mention osa-MIR1441
(6 sentences)

Sequence

264159 reads, 946.0 reads per million, 142 experiments

guuuuuucAUUCGUGUCCGAAAACUCCUUuugauaucuggucaaacauucgaugugacaucuaaaaauuuucuuuucgcgaacuaagggccuguuuaguucgcgaaaagaaaAUUUUUGGGUGUCACAUCGGACGUuuaaccggaugucggaaaagguuuucagacacgaauaaaaaaac
(((((((.(((((((((.(((((((..((((((((((((((.((((.((((((((((((((((((((((((((((((((((((((((......)))))))))))))))))))))))))))))))))))))))).)))).))))))))))))))..))))))).))))))))).)))))))

Structure

       c         C       CC              c    a                                        gg 
guuuuuu AUUCGUGUC GAAAACU  UUuugauaucuggu aaac uucgaugugacaucuaaaaauuuucuuuucgcgaacuaag  c
||||||| ||||||||| |||||||  |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||   
caaaaaa uaagcacag cuuuugg  aaggcuguaggcca uuUG AGGCUACACUGUGGGUUUUUAaaagaaaagcgcuugauuu  c
       a         a       aa              a    C                                        gu 

Annotation confidence Low

Genome context

12: 19485741-19485920 [-]

Mature osa-miR1441-5p

• Accession: MIMAT0056036
• Description: Oryza sativa osa-miR1441-5p mature miRNA
• Sequence: 9 - AUUCGUGUCCGAAAACUCCUU - 29
• Evidence: experimental ; unknown

Mature osa-miR1441-3p

• Accession: MIMAT0005991
• Description: Oryza sativa osa-miR1441-3p mature miRNA
• Sequence: 113 - AUUUUUGGGUGUCACAUCGGACGU - 136
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25