Stem-loop osa-MIR1442

Accession

MI0007030

Description

Oryza sativa osa-MIR1442 precursor miRNA

Literature search

1 open access papers mention osa-MIR1442
(1 sentences)

Sequence

37170 reads, 125.0 reads per million, 142 experiments

ucuauauucauaguacuagauguGUCACAUCCAGUACUAGGUUGGUguuuuaugggacgaagggaguagaucuuuugcuaaguggaggcuaaauucucaucaucagaggaguauacuacuccaUCCGUCCCAUAAUAUAAGggauaauggguggaugcgacacauccuaguaaaaugaaucugga
((((.((((((..(((((((((((((.((((((.(..........(((.((((((((((...(((((((.(((((((....((((((......))).)))...))))))).....)))))))...)))))))))).)))..........).)))))).))))))).))))))..)))))).))))

Structure

    u      ag      -       A      G ACUAGGUUGG   u          aag       ----a       cuaa   -   gc 
ucua auucau  uacuag auguGUC CAUCCA U          Ugu uuaugggacg   ggaguag     ucuuuug    gug gag  u
|||| ||||||  |||||| ||||||| |||||| |          ||| ||||||||||   |||||||     |||||||    ||| |||   
aggu uaagua  augauc uacacag guaggu g          AUA AAUACCCUGC   ccucauc     aggagac    uac cuu  a
    c      aa      c       c      g guaauaggGA   U          CUa       auaug       -uac   u   aa 

Annotation confidence Low

Genome context

7: 27589072-27589256 [+]

Mature osa-miR1442-5p

• Accession: MIMAT0005992
• Description: Oryza sativa osa-miR1442-5p mature miRNA
• Sequence: 24 - GUCACAUCCAGUACUAGGUUGGU - 46
• Evidence: experimental ; cloned [1]

Mature osa-miR1442-3p

• Accession: MIMAT0056037
• Description: Oryza sativa osa-miR1442-3p mature miRNA
• Sequence: 124 - UCCGUCCCAUAAUAUAAG - 141
• Evidence: experimental ; unknown

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25