Stem-loop osa-MIR1442

Accession

MI0007030

Description

Oryza sativa osa-MIR1442 precursor miRNA

Literature search

1 open access papers mention osa-MIR1442
(1 sentences)

Sequence

172 reads, 38 reads per million, 2 experiments

ucuauAUUCAUAGUACUAGAUGUGUcacauccaguacuagguugguguuuuaugggacgaagggaguagaucuuuugcuaaguggaggcuaaauucucaucaucagaggaguauacuacuccauccgucccauaauauaagggauaauggguggaugcgacacauccuaguaaaaugaaucugga
((((.((((((..(((((((((((((.((((((.(..........(((.((((((((((...(((((((.(((((((....((((((......))).)))...))))))).....)))))))...)))))))))).)))..........).)))))).))))))).))))))..)))))).))))

Structure

    u      AG      -       a      g acuagguugg   u          aag       ----a       cuaa   -   gc 
ucua AUUCAU  UACUAG AUGUGUc caucca u          ugu uuaugggacg   ggaguag     ucuuuug    gug gag  u
|||| ||||||  |||||| ||||||| |||||| |          ||| ||||||||||   |||||||     |||||||    ||| |||   
aggu uaagua  augauc uacacag guaggu g          aua aauacccugc   ccucauc     aggagac    uac cuu  a
    c      aa      c       c      g guaauaggga   u          cua       auaug       -uac   u   aa 

Annotation confidence Not enough data

Genome context

Chr7: 27589072-27589256 [+]

Mature osa-miR1442

• Accession: MIMAT0005992
• Description: Oryza sativa osa-miR1442 mature miRNA
• Sequence: 6 - AUUCAUAGUACUAGAUGUGU - 25
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25