Dead hairpin entry

Stem-loop osa-MIR1442

Accession

MI0007030

Description

Oryza sativa osa-MIR1442 precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention osa-MIR1442
(1 sentences)

Sequence

37170 reads, 125.0 reads per million, 142 experiments

ucuauauucauaguacuagauguGUCACAUCCAGUACUAGGUUGGUguuuuaugggacgaagggaguagaucuuuugcuaaguggaggcuaaauucucaucaucagaggaguauacuacuccaUCCGUCCCAUAAUAUAAGggauaauggguggaugcgacacauccuaguaaaaugaaucugga
((((.((((((..(((((((((((((.((((((.(..........(((.((((((((((...(((((((.(((((((....((((((......))).)))...))))))).....)))))))...)))))))))).)))..........).)))))).))))))).))))))..)))))).))))

Structure

    u      ag      -       A      G ACUAGGUUGG   u          aag       ----a       cuaa   -   gc 
ucua auucau  uacuag auguGUC CAUCCA U          Ugu uuaugggacg   ggaguag     ucuuuug    gug gag  u
|||| ||||||  |||||| ||||||| |||||| |          ||| ||||||||||   |||||||     |||||||    ||| |||   
aggu uaagua  augauc uacacag guaggu g          AUA AAUACCCUGC   ccucauc     aggagac    uac cuu  a
    c      aa      c       c      g guaauaggGA   U          CUa       auaug       -uac   u   aa