Stem-loop osa-MIR1439

Accession

MI0007031

Description

Oryza sativa osa-MIR1439 precursor miRNA

Literature search

4 open access papers mention osa-MIR1439
(8 sentences)

Sequence

47 reads, 16 reads per million, 2 experiments

uauuguuuuguuauaaauguaauacuaccuccgucccaaaauauagccauuuuuagcuaugaaucuagacauuguuuuuagcuaugaaucuagacauacaauguccaaauucauaacuaaaaaugcuuauaUUUUGGAACGGAGUGAGUAUUaaauuuguaguuuugugaua
..........((((((((.(((((((..((((((.(((((((((((.(((((((((.(((((((...((((((((.(((((........)))))...))))))))...))))))).))))))))).))))))))))).))))))..))))))).))))))))..........

Structure

uauuguuuug        g       ac      c           c         c       cua        --u     cua 
          uuauaaau uaauacu  cuccgu ccaaaauauag cauuuuuag uaugaau   gacauugu   uuuag   u
          |||||||| |||||||  |||||| ||||||||||| ||||||||| |||||||   ||||||||   |||||    
          gauguuua aUUAUGA  GAGGCA GGUUUUauauu guaaaaauc auacuua   cuguaaca   agauc   g
auaguguuuu        a       GU      A           c         a       aac        uac     uaa 

Annotation confidence Not enough data

Genome context

Chr12: 10074109-10074280 [+]

Mature osa-miR1439

• Accession: MIMAT0005993
• Description: Oryza sativa osa-miR1439 mature miRNA
• Sequence: 132 - UUUUGGAACGGAGUGAGUAUU - 152
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25