Stem-loop osa-MIR1439

Accession

MI0007031

Description

Oryza sativa osa-MIR1439 precursor miRNA

Literature search

5 open access papers mention osa-MIR1439
(12 sentences)

Sequence

50159 reads, 195.0 reads per million, 142 experiments

uauuguuuuguuauaaauguaauacuaccuccgucccaaaauauagccAUUUUUAGCUAUGAAUCUagacauuguuuuuagcuaugaaucuagacauacaauguccaaauucauaacuaaaaaugCUUAUAUUUUGGAACGGAGugaguauuaaauuuguaguuuugugaua
..........((((((((.(((((((..((((((.(((((((((((.(((((((((.(((((((...((((((((.(((((........)))))...))))))))...))))))).))))))))).))))))))))).))))))..))))))).))))))))..........

Structure

uauuguuuug        g       ac      c           c         C       CUa        --u     cua 
          uuauaaau uaauacu  cuccgu ccaaaauauag cAUUUUUAG UAUGAAU   gacauugu   uuuag   u
          |||||||| |||||||  |||||| ||||||||||| ||||||||| |||||||   ||||||||   |||||    
          gauguuua auuauga  GAGGCA GGUUUUAUAUU guaaaaauc auacuua   cuguaaca   agauc   g
auaguguuuu        a       gu      A           C         a       aac        uac     uaa 

Annotation confidence Low

Genome context

12: 10074109-10074280 [+]

Mature osa-miR1439-5p

• Accession: MIMAT0056038
• Description: Oryza sativa osa-miR1439-5p mature miRNA
• Sequence: 49 - AUUUUUAGCUAUGAAUCU - 66
• Evidence: experimental ; unknown

Mature osa-miR1439-3p

• Accession: MIMAT0005993
• Description: Oryza sativa osa-miR1439-3p mature miRNA
• Sequence: 126 - CUUAUAUUUUGGAACGGAG - 144
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25