Dead hairpin entry

Stem-loop osa-MIR1439

Accession

MI0007031

Description

Oryza sativa osa-MIR1439 precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

5 open access papers mention osa-MIR1439
(12 sentences)

Sequence

50159 reads, 195.0 reads per million, 142 experiments

uauuguuuuguuauaaauguaauacuaccuccgucccaaaauauagccAUUUUUAGCUAUGAAUCUagacauuguuuuuagcuaugaaucuagacauacaauguccaaauucauaacuaaaaaugCUUAUAUUUUGGAACGGAGugaguauuaaauuuguaguuuugugaua
..........((((((((.(((((((..((((((.(((((((((((.(((((((((.(((((((...((((((((.(((((........)))))...))))))))...))))))).))))))))).))))))))))).))))))..))))))).))))))))..........

Structure

uauuguuuug        g       ac      c           c         C       CUa        --u     cua 
          uuauaaau uaauacu  cuccgu ccaaaauauag cAUUUUUAG UAUGAAU   gacauugu   uuuag   u
          |||||||| |||||||  |||||| ||||||||||| ||||||||| |||||||   ||||||||   |||||    
          gauguuua auuauga  GAGGCA GGUUUUAUAUU guaaaaauc auacuua   cuguaaca   agauc   g
auaguguuuu        a       gu      A           C         a       aac        uac     uaa