Stem-loop ptc-MIR1445

Accession

MI0007040

Description

Populus trichocarpa ptc-MIR1445 precursor miRNA

Sequence

aagcuaauuaaucugauuucccuaguuuauaaguuguuacaauugaaugaaccuuguuugcaagcauaggauuaguugccgcccaccauaaaUCCCUUGUAGACUAGAAAAAucuaaucugauuugguuu
((((((((((((..(((((..((((((((((((..((..(((((((.....(((((((....)))).))).)))))))..)).............))))))))))))..)))))..)).))).)))))))

Structure

       -   -  cu     cc            -----------uu  ua       augaa   -    u 
aagcuaa uua au  gauuu  cuaguuuauaag             gu  caauuga     ccu uguu g
||||||| ||| ||  |||||  ||||||||||||             ||  |||||||     ||| ||||  
uuugguu agu ua  cuAAA  GAUCAGAUGUUC             cg  guugauu     gga acga c
       u   c  au     AA            CCUaaauaccacc  cc       ----a   u    a 

Annotation confidence Not enough data

Genome context

CM000348.2: 6339575-6339704 [-]

Mature ptc-miR1445

• Accession: MIMAT0006002
• Description: Populus trichocarpa ptc-miR1445 mature miRNA
• Sequence: 93 - UCCCUUGUAGACUAGAAAAA - 112
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151