Stem-loop ptc-MIR1446c

Accession

MI0007044

Description

Populus trichocarpa ptc-MIR1446c precursor miRNA MIR1446

Gene
family

RF00954; MIR1446

Literature search

1 open access papers mention ptc-MIR1446c
(4 sentences)

Sequence

ccaacuuuUUCUGAACUCUCUCCCUCAAcugcuauucuagagcuuccugagcuaacccuuguguuucuguguagcagucaaggugggaggcucagaaaauguugg
(((((.((((((((.(.((((((((..((((((((..((((((((...)))).............)))).))))))))..))).)))))).)))))))).)))))

Structure

     u        A U     -   CA        uc    -------------    c 
ccaac uuUUCUGA C CUCUC CCU  Acugcuau  uaga             gcuu  
||||| |||||||| | ||||| |||  ||||||||  ||||             |||| c
gguug aaaagacu g gaggg gga  ugacgaug  gucu             cgag  
     u        c -     u   ac        -u    uuguguucccaau    u 

Annotation confidence Not enough data

Genome context

CM000348.2: 11790900-11791004 [+]

Mature ptc-miR1446c

• Accession: MIMAT0006006
• Description: Populus trichocarpa ptc-miR1446c mature miRNA
• Sequence: 9 - UUCUGAACUCUCUCCCUCAA - 28
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151