Stem-loop ptc-MIR1446e

Accession

MI0007046

Description

Populus trichocarpa ptc-MIR1446e precursor miRNA

Literature search

1 open access papers mention ptc-MIR1446e
(4 sentences)

Sequence

48991 reads, 825.0 reads per million, 9 experiments

ccaacuuuUUCUGAACUCUCUCCCUCAAcugcuauucuagagcuuguuaauccuugucaaguguuucccuguagcaguCGAGGCGAGGGGGUUUCGGAAAAUGuugg
(((((.((((((((((((((((((((.((((((((......(((((...........)))))........)))))))).)))).))))))).))))))))).)))))

Structure

     u         -       -    A        --ucuaga     uuaa 
ccaac uuUUCUGAA CUCUCUC CCUC Acugcuau        gcuug    u
||||| ||||||||| ||||||| |||| ||||||||        |||||    c
gguuG AAAAGGCUU GGGGGAG GGAG ugacgaug        ugaac    c
     U         U       C    C        ucccuuug     uguu 

Annotation confidence High

Genome context

CM000351.2: 12482366-12482472 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR1446e

Mature ptc-miR1446e-5p

• Accession: MIMAT0006008
• Description: Populus trichocarpa ptc-miR1446e-5p mature miRNA
• Sequence: 9 - UUCUGAACUCUCUCCCUCAA - 28
• Evidence: experimental ; cloned [1]

Mature ptc-miR1446e-3p

• Accession: MIMAT0055663
• Description: Populus trichocarpa ptc-miR1446e-3p mature miRNA
• Sequence: 79 - CGAGGCGAGGGGGUUUCGGAAAAUG - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151