Stem-loop ptc-MIR1447

Accession

MI0007047

Description

Populus trichocarpa ptc-MIR1447 precursor miRNA

Literature search

2 open access papers mention ptc-MIR1447
(3 sentences)

Sequence

108839 reads, 1781.0 reads per million, 9 experiments

gaggcccuaaUCAGGGCACUGCAAUUCUAAAUGucuguuggcaaguggcgaugccagacguuugaaauuuacuuaucauuuauuaguCAGAAUUGCAGUGCCUUGAUUugggcuuu
(((((((.((((((((((((((((((((((((((((...((((........)))))))))))).........................)))))))))))))))))))).)))))))

Structure

       u                    -------------------------        guu    agu 
gaggccc aaUCAGGGCACUGCAAUUCU                         AAAUGucu   ggca   g
||||||| ||||||||||||||||||||                         ||||||||   ||||    
uuucggg UUAGUUCCGUGACGUUAAGA                         uuugcaga   ccgu   g
       u                    Cugauuauuuacuauucauuuaaag        ---    agc 

Annotation confidence High

Genome context

CM000349.2: 14548570-14548685 [+]

Mature ptc-miR1447-5p

• Accession: MIMAT0055664
• Description: Populus trichocarpa ptc-miR1447-5p mature miRNA
• Sequence: 11 - UCAGGGCACUGCAAUUCUAAAUG - 33
• Evidence: experimental ; unknown

Mature ptc-miR1447-3p

• Accession: MIMAT0006009
• Description: Populus trichocarpa ptc-miR1447-3p mature miRNA
• Sequence: 88 - CAGAAUUGCAGUGCCUUGAUU - 108
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151