Stem-loop ptc-MIR1448

Accession

MI0007048

Description

Populus trichocarpa ptc-MIR1448 precursor miRNA

Literature search

3 open access papers mention ptc-MIR1448
(129 sentences)

Sequence

208298 reads, 3424.0 reads per million, 9 experiments

guuacgggUAUGGGAGGAUUGGACAGUACUGcuugguuuuaauuaaccaaagucuguuCUUUCCAACGCCUCCCAUACcgguaau
(((((.(((((((((((.(((((.((.((.((((((((......)))).))))..)).)).)))))..))))))))))).)))))

Structure

     g           -A     C  U  -U    -    uu 
guuac ggUAUGGGAGG  UUGGA AG AC  Gcuu gguu  a
||||| |||||||||||  ||||| || ||  |||| ||||   
uaaug cCAUACCCUCC  AACCU UC ug  ugaa ccaa  a
     g           GC     U  u  uc    a    uu 

Annotation confidence High

Genome context

CM000344.2: 8028236-8028320 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR1448

Mature ptc-miR1448-5p

• Accession: MIMAT0055665
• Description: Populus trichocarpa ptc-miR1448-5p mature miRNA
• Sequence: 9 - UAUGGGAGGAUUGGACAGUACUG - 31
• Evidence: experimental ; unknown

Mature ptc-miR1448-3p

• Accession: MIMAT0006010
• Description: Populus trichocarpa ptc-miR1448-3p mature miRNA
• Sequence: 59 - CUUUCCAACGCCUCCCAUAC - 78
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151