Stem-loop hiv1-mir-TAR

Accession

MI0007073

Description

Human immunodeficiency virus 1 hiv1-mir-TAR precursor miRNA

Sequence

gggUCUCUCUGGUUAGACCAGAUCUGAgccugggagcUCUCUGGCUAACUAGGGAACCCAc
((((.(((((((((((.(((((...((((......))))))))))))))))))))))))..

Structure

--    C           A     UCU    cu 
  gggU UCUCUGGUUAG CCAGA   GAgc  g
  |||| ||||||||||| |||||   ||||   
  CCCA AGGGAUCAAUC GGUCU   CUcg  g
cA    -           -     ---    ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature hiv1-miR-TAR-5p

• Accession: MIMAT0006016
• Description: Human immunodeficiency virus 1 hiv1-miR-TAR-5p mature miRNA
• Sequence: 4 - UCUCUCUGGUUAGACCAGAUCUGA - 27
• Evidence: experimental ; cloned [1], Northern [1]

Mature hiv1-miR-TAR-3p

• Accession: MIMAT0006017
• Description: Human immunodeficiency virus 1 hiv1-miR-TAR-3p mature miRNA
• Sequence: 38 - UCUCUGGCUAACUAGGGAACCCA - 60
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18299284
   Identification of functional microRNAs released through asymmetrical processing of HIV-1 TAR element
   "Ouellet DL, Plante I, Landry P, Barat C, Janelle ME, Flamand L, Tremblay MJ, Provost P"
   "Nucleic Acids Res (2008) 36:2353-2365