Stem-loop gma-MIR1518

Accession

MI0007231

Description

Glycine max gma-MIR1518 precursor miRNA

Literature search

2 open access papers mention gma-MIR1518
(2 sentences)

Sequence

13392 reads, 57.0 reads per million, 167 experiments

augugcaaaauguguugUAAAGUGAAUAUCAUCGGCACAUaggucaugagaucaacauugacagauuuacaggcagccuugacgugagaacacgauaaauguuuagccugauauUCACCACAAUCACACUUUUGGaau
...(.(((((((((((((...((((((((((..(((((((((((..(((((((..........))))).))....))))...((((....))))....))))...))))))))))))).)))).)))).))))).)..

Structure

aug g     -    -    AAA          UC   ---    -------------------    --ca  -     aaca 
   u caaaa ugug uugU   GUGAAUAUCA  GGC   ACAU                   aggu    ug agauc    u
   | ||||| |||| ||||   ||||||||||  |||   ||||                   ||||    || |||||     
   a GUUUU ACAC AACA   CACUuauagu  ccg   ugua                   uccg    ac uuuag    u
-ua G     C    U    --C          --   auu    aauagcacaagagugcagu    acgg  a     acag 

Annotation confidence Low

Genome context

chr9: 7525122-7525259 [+]

Mature gma-miR1518-5p

• Accession: MIMAT0007377
• Description: Glycine max gma-miR1518-5p mature miRNA
• Sequence: 18 - UAAAGUGAAUAUCAUCGGCACAU - 40
• Evidence: experimental ; 454 [1]

Mature gma-miR1518-3p

• Accession: MIMAT0054030
• Description: Glycine max gma-miR1518-3p mature miRNA
• Sequence: 115 - UCACCACAAUCACACUUUUGG - 135
• Evidence: experimental ; unknown

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160