Stem-loop gma-MIR1520a

Accession

MI0007235

Description

Glycine max gma-MIR1520a precursor miRNA

Literature search

2 open access papers mention gma-MIR1520a
(2 sentences)

Sequence

41177 reads, 121.0 reads per million, 178 experiments

aaaggaauguugaccgucaugugucaugUUCUUAUUGGAUGAUGACUGUugugucauguucugauuggucaaugaaaauaacaaugcauuucaucuuuuauggaguugacauccaauUAGAACAUGAUACAUGACAGUCAucauccaaua
..((((((((.(((........)))))))))))((((((((((((((((((((((((((((((((((((((((....((((..(((.....)))...))))...)))))...)))))))))))))))))))..)))))))))))))))).

Structure

aaaggaauguugaccgucaugugucaugUUCUU                --                   ---     gaaa    -ca   c 
                                 AUUGGAUGAUGACUGU  ugugucauguucugauugg   ucaau    auaa   aug a
                                 ||||||||||||||||  |||||||||||||||||||   |||||    ||||   ||| u
                                 uaaccuacuACUGACA  ACAUAGUACAAGAUuaacc   aguug    uauu   uac u
--------------------------------a                GU                   uac     -agg    uuc   u 

Annotation confidence Low

Genome context

chr14: 17975535-17975684 [-]

Mature gma-miR1520a-5p

• Accession: MIMAT0054034
• Description: Glycine max gma-miR1520a-5p mature miRNA
• Sequence: 29 - UUCUUAUUGGAUGAUGACUGU - 49
• Evidence: experimental ; unknown

Mature gma-miR1520a-3p

• Accession: MIMAT0007381
• Description: Glycine max gma-miR1520a-3p mature miRNA
• Sequence: 118 - UAGAACAUGAUACAUGACAGUCA - 140
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160