Stem-loop gma-MIR1520b

Accession

MI0007243

Description

Glycine max gma-MIR1520b precursor miRNA

Literature search

2 open access papers mention gma-MIR1520b
(2 sentences)

Sequence

54747 reads, 144.0 reads per million, 178 experiments

cgugucACGUUCUUAUUGAAUGAUGACUauuacgugucauguucugaucgaccaaugacaacaacaauaauucgacauccAAUCAGAACAUGACACGUGACAGUcaucauuuaauaagaacgugacaua
.(((((((((((((((((((((((((((.((((((((((((((((((((((....................)))).......)))))))))))))))))).))))))))))))))))))))))))))).

Structure

c                           a                  -------    ccaaugaca 
 gugucACGUUCUUAUUGAAUGAUGACU uuacgugucauguucuga       ucga         a
 ||||||||||||||||||||||||||| ||||||||||||||||||       ||||          
 uacagugcaagaauaauuuacuacUGA AGUGCACAGUACAAGACU       agcu         c
a                           C                  AAccuac    uaauaacaa 

Annotation confidence Low

Genome context

chr20: 41755528-41755656 [-]

Mature gma-miR1520b-5p

• Accession: MIMAT0054039
• Description: Glycine max gma-miR1520b-5p mature miRNA
• Sequence: 7 - ACGUUCUUAUUGAAUGAUGACU - 28
• Evidence: experimental ; unknown

Mature gma-miR1520b-3p

• Accession: MIMAT0007387
• Description: Glycine max gma-miR1520b-3p mature miRNA
• Sequence: 81 - AAUCAGAACAUGACACGUGACAGU - 104
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160