Stem-loop gma-MIR1527

Accession

MI0007245

Description

Glycine max gma-MIR1527 precursor miRNA

Literature search

1 open access papers mention gma-MIR1527
(1 sentences)

Sequence

29578 reads, 87.0 reads per million, 178 experiments

cucacaagccggUUUUGUAAGGUUGAGUUAGaccucaaauuucaacaugguaucagagccauugaaccacaugcuaucagguuuccgcuaucgggccaccccccauuuaugucuacgaaccaaaccuaauagugcugaucgugaggggguguguuaagagucccacaucggauaggacauggucugacaauauauuuauaaaguugaggccUAACUCAACCUUACAAAACCggcuugugag
(((((((((((((((((((((((((((((((.((((((...(((..(((((......))))))))((((..(.(((((.(((....(((....((((((((((...((((((((((...............)))..)).)))))))))))).)))...))).....))).))))).)..))))....................)))))).)))))))))))))))))))))))))))))))

Structure

                               a      auuucaacaugguaucagagccauuga    ca g     a   -uucc   aucg   -       cau     -  --   gaacca 
cucacaagccggUUUUGUAAGGUUGAGUUAG ccucaa                           acca  u cuauc ggu     gcu    ggc caccccc   uuaug uc  uac      a
||||||||||||||||||||||||||||||| ||||||                           ||||  | ||||| |||     |||    ||| |||||||   ||||| ||  |||      a
gaguguucggCCAAAACAUUCCAACUCAAUc ggaguu                           uggu  a gauag cua     uga    uug guggggg   agugc ag  gug      c
                               c      -------gaaauauuuauauaacaguc    ac g     g   caccc   -gaa   u       ---     u  uc   auaauc 

Annotation confidence High

Genome context

Unknown

Mature gma-miR1527-5p

• Accession: MIMAT0054041
• Description: Glycine max gma-miR1527-5p mature miRNA
• Sequence: 13 - UUUUGUAAGGUUGAGUUAG - 31
• Evidence: experimental ; unknown

Mature gma-miR1527-3p

• Accession: MIMAT0007389
• Description: Glycine max gma-miR1527-3p mature miRNA
• Sequence: 212 - UAACUCAACCUUACAAAACC - 231
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160